Pumpkin Cheesecake Cupcakes combine the best of both worlds—spiced pumpkin cake and creamy cheesecake—in one irresistible bite. With a soft, flavorful pumpkin base, a rich cream cheese center, and a swirl of frosting on top, these cupcakes are everything you love about fall wrapped into a handheld treat. Perfect for parties, holidays, or cozy nights in, they’re sure to become a seasonal favorite.
Why We Love This Pumpkin Cheesecake Cupcakes Recipe
What makes Pumpkin Cheesecake Cupcakes stand out? First and foremost, it’s the combination of textures and flavors. The moist, spiced pumpkin cake pairs beautifully with the creamy cheesecake filling, creating a delightful contrast in every bite. The addition of warm spices like cinnamon and nutmeg adds warmth, evoking cozy memories of crisp autumn days.
Moreover, these cupcakes are incredibly versatile. They suit various occasions, whether it’s a festive gathering, a simple family dinner, or even a school bake sale. Each cupcake boasts a perfect blend of sweetness and spice, making them a crowd favorite that satisfies different palates.
What’s more, the recipe is simple to follow, making it accessible even for novice bakers. You can whip up a batch in no time, turning your kitchen into a delightful bakery that fills the air with the heartwarming scent of fall spices. With just a handful of ingredients and straightforward instructions, your journey into baking these cupcakes is about to begin!
Ingredients for Pumpkin Cheesecake Cupcakes
To create these scrumptious Pumpkin Cheesecake Cupcakes, you’ll need the following ingredients:
- For the Cupcakes:
- 4 ounces cream cheese, softened
- 1/3 cup granulated sugar
- 1/2 teaspoon pumpkin pie spice
- 1 cup all-purpose flour
- 1 teaspoon pumpkin pie spice
- 1 teaspoon baking powder
- 1/2 teaspoon cinnamon
- 1/2 teaspoon baking soda
- 1/4 teaspoon nutmeg
- 1/4 teaspoon salt
- 1 cup pumpkin puree
- 1/2 cup granulated sugar
- 1/3 cup light brown sugar, packed
- 1/2 cup vegetable oil
- 2 large eggs
- For the Cream Cheese Frosting:
- 1 block (8 ounces) cream cheese, softened
- 1/2 cup salted butter, softened
- 1 teaspoon vanilla extract
- 2 cups powdered sugar
How to Make Pumpkin Cheesecake Cupcakes Directions
Creating these delightful cupcakes is an enjoyable process that transforms simple ingredients into a marvelous treat. Follow these detailed steps to ensure your Pumpkin Cheesecake Cupcakes turn out perfectly every time:
Preheat Your Oven
Start by preheating your oven to 350 degrees Fahrenheit. Preparation is key, so while the oven warms up, you can tackle the other steps.
Prepare the Muffin Tin
Line a 12-cup muffin tin with paper liners. This step not only helps in keeping the cupcakes from sticking but also adds a lovely touch to your cupcakes when you serve them.
Make the Cheesecake Filling
In a mixing bowl, take your softened cream cheese, granulated sugar, and pumpkin pie spice. Using a handheld mixer or a stand mixer, beat the mixture on medium speed until it’s creamy and smooth. Once done, set this aside as you’ll be using it later.
Mix the Dry Ingredients
In another large mixing bowl, combine the all-purpose flour, pumpkin pie spice, baking powder, ground cinnamon, baking soda, nutmeg, and salt. Whisk these dry ingredients together to ensure they’re well mixed.
Prepare the Wet Ingredients
In a separate bowl, mix together the pumpkin puree, granulated sugar, light brown sugar, vegetable oil, and eggs. Beat these together until they are fully combined and smooth.
Combine Wet and Dry Ingredients
Pour the wet ingredients over the dry mixture. Use a spatula or wooden spoon to gently stir until everything is combined. Be careful not to overmix; it’s okay if there are a few lumps.
Fill the Muffin Liners
Using a scoop, pour about 1/4 cup of the pumpkin batter into each lined muffin cup. Then, take about 2 teaspoons of your cheesecake filling and drop it in the center of each cupcake. Cover the cream cheese filling with the remaining batter, ensuring it’s fully hidden.
Bake
Place the muffin tin in the preheated oven and bake for approximately 18 minutes. You’ll know the cupcakes are done when a toothpick inserted into the center of a cupcake comes out clean.
Cooling
Once baked, remove the muffin tin from the oven and allow the cupcakes to cool in the tin for about 5 minutes. Then carefully move them to a wire rack to cool completely before frosting.
Prepare the Cream Cheese Frosting
For the frosting, beat the softened cream cheese and salted butter in a bowl until smooth and creamy. Add the vanilla extract and mix until incorporated. Gradually add the powdered sugar, beating until the frosting reaches a fluffy consistency.
Frost the Cupcakes
Once your cupcakes are completely cooled, you can frost them generously with the cream cheese frosting. Feel free to get creative here—use a piping bag for fancy swirls or simply spread the frosting with a spatula for a rustic look.
How to Serve Pumpkin Cheesecake Cupcakes
Serving Pumpkin Cheesecake Cupcakes is a delightful experience. Here are a few ideas to make your presentation stand out:
- Plating: Arrange the cupcakes on a decorative plate or a cake stand to create a beautiful centerpiece. You can layer them with decorative leaves or small pumpkins for extra seasonal flair.
- Adding Garnishes: Consider adding a sprinkle of cinnamon or a drizzle of caramel on top for extra flavor and visual appeal.
- Pairing: These cupcakes pair wonderfully with a warm beverage such as coffee, tea, or apple cider. The warmth of the drinks complements the spices in the cupcakes beautifully.
- Storing: If you have leftovers (though they might go quickly!), store them in an airtight container. These cupcakes can also be individually wrapped and given as gifts.
Expert Tips: Pumpkin Cheesecake Cupcakes
Creating perfect Pumpkin Cheesecake Cupcakes is a joyful experience and comes with its own set of tips. Here are some expert suggestions to elevate your baking game:
- Room Temperature Ingredients: Ensure your cream cheese, eggs, and butter are at room temperature for the best mixing properties. This helps in achieving a smoother batter and frosting.
- Don’t Overmix: Be gentle when combining wet and dry ingredients. Overmixing can lead to tough cupcakes. Stir just until the ingredients are combined.
- Use Fresh Spices: For the best flavor, make sure to use fresh spices. Old spices might lose their potency, resulting in cupcakes that lack that rich, warm flavor we crave in fall baking.
- Check for Doneness: Every oven is different. Start checking your cupcakes a minute or two before the recommended baking time to ensure they don’t overbake.
- Cool Completely: Allow your cupcakes to cool completely before you frost them. Frosting warm cupcakes can lead to melting, and nobody wants a puddle of frosting!
How to Store Pumpkin Cheesecake Cupcakes
Storing your Pumpkin Cheesecake Cupcakes properly helps maintain their freshness and flavor. Here are some essential storage tips:
- Room Temperature: If you plan to enjoy the cupcakes within 1-2 days, store them in an airtight container at room temperature. This keeps them soft and delicious.
- In the Refrigerator: For longer storage, or if you have leftover frosted cupcakes, keep them in the refrigerator where they can last for up to a week. Ensure they’re covered properly to prevent them from drying out.
- Freezing: These cupcakes freeze well! If you want to keep them for an extended period, place the unfrosted cupcakes in a single layer in an airtight container and freeze for up to three months. When ready to enjoy, thaw them at room temperature and frost as desired.
Variation of Pumpkin Cheesecake Cupcakes
Pumpkin Cheesecake Cupcakes are incredibly versatile. Here are some variations you can try to switch things up:
- Add Nuts: For a delightful crunch, try adding chopped walnuts or pecans to the pumpkin batter. They not only add texture but also enhance the flavor.
- Different Frosting: Experiment with various frostings. For a fall twist, try a maple buttercream or a spiced whipped cream topping.
- Chocolate Drizzle: For chocolate lovers, consider adding a drizzle of melted chocolate over the frosting or folding chocolate chips into the batter for a sumptuous surprise.
- Mini-Cupcakes: If you prefer smaller bites, use a mini muffin tin and reduce the baking time. Mini pumpkin cheesecake cupcakes make for perfect party desserts or snack options.
- Dairy-Free: Substitute dairy ingredients with plant-based alternatives such as almond or coconut cream cheese, almond milk, and flaxseed eggs. This way, you can cater to different dietary preferences.
FAQ
What is the best way to enjoy Pumpkin Cheesecake Cupcakes?
The best way to enjoy Pumpkin Cheesecake Cupcakes is fresh after frosting, paired with a warm beverage like coffee or cider. However, they’re also delicious chilled straight out of the fridge!
Can I make these cupcakes ahead of time?
Absolutely! You can bake the cupcakes a day in advance. Frost them just before serving to keep the cream cheese frosting fresh and fluffy.
How can I tell if my cupcakes are done baking?
To check for doneness, insert a toothpick into the center of a cupcake. If it comes out clean or with a few moist crumbs, your cupcakes are ready.
Are Pumpkin Cheesecake Cupcakes suitable for freezing?
Yes, they freeze excellently! Just store them unfrosted in an airtight container. Frost them once thawed for the best texture and flavor.
Can I use homemade pumpkin puree instead of canned?
Certainly! Homemade pumpkin puree works great. Just make sure it’s well-drained and not too watery for the best results in both the cupcake and the cheesecake filling.

Pumpkin Cheesecake Cupcakes
Ingredients
For the Cupcakes
- 4 ounces cream cheese, softened
- 1/3 cup granulated sugar
- 1/2 teaspoon pumpkin pie spice
- 1 cup all-purpose flour
- 1 teaspoon pumpkin pie spice
- 1 teaspoon baking powder
- 1/2 teaspoon cinnamon
- 1/2 teaspoon baking soda
- 1/4 teaspoon nutmeg
- 1/4 teaspoon salt
- 1 cup pumpkin puree
- 1/2 cup granulated sugar
- 1/3 cup light brown sugar, packed
- 1/2 cup vegetable oil
- 2 large eggs
For the Cream Cheese Frosting
- 1 block (8 ounces) cream cheese, softened
- 1/2 cup salted butter, softened
- 1 teaspoon vanilla extract
- 2 cups powdered sugar
Instructions
Preparation
- Preheat your oven to 350 degrees Fahrenheit.
- Line a 12-cup muffin tin with paper liners.
- In a mixing bowl, combine softened cream cheese, granulated sugar, and pumpkin pie spice. Beat until creamy and smooth, then set aside.
- In another bowl, whisk together all-purpose flour, pumpkin pie spice, baking powder, cinnamon, baking soda, nutmeg, and salt.
- In a separate bowl, mix pumpkin puree, granulated sugar, light brown sugar, vegetable oil, and eggs until fully combined and smooth.
- Pour the wet ingredients into the dry ingredients and gently stir until combined, being careful not to overmix.
- Fill each lined muffin cup with about 1/4 cup of pumpkin batter, then place about 2 teaspoons of cheesecake filling in the center of each and cover with remaining batter.
Baking
- Bake for approximately 18 minutes, or until a toothpick inserted in the center comes out clean.
- Remove from oven and allow to cool for about 5 minutes in the tin, then transfer to a wire rack to cool completely.
Frosting
- Beat softened cream cheese and salted butter until smooth, then add vanilla extract and mix until incorporated.
- Gradually add powdered sugar, beating until fluffy.
- Frost cooled cupcakes with the cream cheese frosting.